PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G107000.1
Common NameB456_002G107000, LOC105782622
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 261aa    MW: 29325.8 Da    PI: 4.9159
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G107000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.18.7e-10143186755
                         HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         ++ r RR++i ++ +eL +l+P        K++ ae+L+ A +YIk+Lq
  Gorai.002G107000.1 143 IAARERRRKITKKTQELGKLVPGG-----SKMNTAEMLQSAFKYIKYLQ 186
                         67799*****************95.....5******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.67E-10134189No hitNo description
SuperFamilySSF474592.09E-12135195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.576136185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-11141193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-11142191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.9E-8143186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MVLSSYFDCQ TDVPMYEIKT VEAESETQLA AADGLECYWN AFELPCTFPA SYLDPQNYTS  60
LLPLYSIPPE VIPYETLSSY PCPKRHKLIE DHYCSDLMPG VFDGVAVSPC PLLEDHQINL  120
EGMKTVGNCN KISEEKCVTV QSIAARERRR KITKKTQELG KLVPGGSKMN TAEMLQSAFK  180
YIKYLQAQVG TLQVMDSFPE NEKRSWDGKM EMVTSPKVQE KLYMEDKCLV AKDAVLSLTT  240
LFKPPLSHEL TRLLSLPSND *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012462937.10.0PREDICTED: transcription factor bHLH53-like
TrEMBLA0A0D2M9A70.0A0A0D2M9A7_G
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1695449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34820.19e-24bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]